CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1689 rna-evm.model.Chr13.1689 Chr13 51020526 51072638 PREDICTED: Baculoviral IAP repeat-containing protein 2 nan K16060
gene-evm.TU.Chr13.169 rna-evm.model.Chr13.169 Chr13 4950017 4962362 PREDICTED: Monocarboxylate transporter 9 GO:0016020;GO:0055085 K08187
gene-evm.TU.Chr13.1691 rna-evm.model.Chr13.1691 Chr13 51078753 51081060 PREDICTED: condensin complex subunit 2 GO:0008270 K10884
gene-evm.TU.Chr13.1692 rna-evm.model.Chr13.1692 Chr13 51081340 51082026 PREDICTED: inner nuclear membrane protein Man1 nan K21233
gene-evm.TU.Chr13.1693 rna-evm.model.Chr13.1693 Chr13 51082766 51084115 PREDICTED: MTRF1L release factor glutamine methyltransferase GO:0008168 K02493
gene-evm.TU.Chr13.1694 rna-evm.model.Chr13.1694 Chr13 51085587 51085874 PREDICTED: THAP domain-containing protein 11 nan nan
gene-evm.TU.Chr13.1695 rna-evm.model.Chr13.1695 Chr13 51095705 51100756 PREDICTED: Patched domain-containing protein 3 GO:0016020 K24682
gene-evm.TU.Chr13.1696 rna-evm.model.Chr13.1696 Chr13 51105665 51109471 PREDICTED: Fumagillin dodecapentaenoate synthase nan K15641
gene-evm.TU.Chr13.1697 rna-evm.model.Chr13.1697 Chr13 51109542 51116039 PREDICTED: Probable polyketide synthase 16 nan K00665
gene-evm.TU.Chr13.1698 rna-evm.model.Chr13.1698 Chr13 51120765 51121196 PREDICTED: microcephalin nan K02755

For more detailed data, you can explore the Download section to access the full dataset.