CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1655 rna-evm.model.Chr13.1655 Chr13 48807628 48811170 PREDICTED: THAP domain-containing protein 7 GO:0003676 K23204
gene-evm.TU.Chr13.1658 rna-evm.model.Chr13.1658 Chr13 48949106 48953335 uncharacterized protein nan nan
gene-evm.TU.Chr13.1662 rna-evm.model.Chr13.1662 Chr13 49501327 49634253 PREDICTED: Neuroligin-1 nan K07378
gene-evm.TU.Chr13.1664 rna-evm.model.Chr13.1664 Chr13 49995475 49995916 PREDICTED: Neuroligin-4, Y-linked nan K07378
gene-evm.TU.Chr13.1665 rna-evm.model.Chr13.1665 Chr13 50151417 50152394 PREDICTED: Neuroligin-1 nan K07378
gene-evm.TU.Chr13.1668 rna-evm.model.Chr13.1668 Chr13 50454205 50458450 uncharacterized protein nan nan
gene-evm.TU.Chr13.167 rna-evm.model.Chr13.167 Chr13 4884390 4889790 PREDICTED: poly [ADP-ribose] polymerase 10/14/15 [EC:2.4.2.30] GO:0003950 K15261
gene-evm.TU.Chr13.1672 rna-evm.model.Chr13.1672 Chr13 50715812 50733280 PREDICTED: Phospholipid scramblase 2 GO:0017121;GO:0017128 K11095
gene-evm.TU.Chr13.1673 rna-evm.model.Chr13.1673 Chr13 50740319 50747311 PREDICTED: Homeobox protein aristaless GO:0003677 K09452
gene-evm.TU.Chr13.1674 rna-evm.model.Chr13.1674 Chr13 50754497 50766943 PREDICTED: Dynein assembly factor with WDR repeat domains 1 GO:0005515 K19760

For more detailed data, you can explore the Download section to access the full dataset.