CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.164 rna-evm.model.Chr13.164 Chr13 4845301 4860556 PREDICTED: Nuclear pore complex protein NUP98B nan K03614
gene-evm.TU.Chr13.1641 rna-evm.model.Chr13.1641 Chr13 48395896 48397966 PREDICTED: Baculoviral IAP repeat-containing protein 7-B nan K16061
gene-evm.TU.Chr13.1642 rna-evm.model.Chr13.1642 Chr13 48400732 48401998 PREDICTED: Baculoviral IAP repeat-containing protein 3 nan K16060
gene-evm.TU.Chr13.1644 rna-evm.model.Chr13.1644 Chr13 48428840 48429400 PREDICTED: reverse transcriptase family protein, partial nan nan
gene-evm.TU.Chr13.1646 rna-evm.model.Chr13.1646 Chr13 48470819 48474286 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan K26653
gene-evm.TU.Chr13.1647 rna-evm.model.Chr13.1647 Chr13 48480084 48500110 PREDICTED: Integrator complex subunit 4 nan K13141
gene-evm.TU.Chr13.1648 rna-evm.model.Chr13.1648 Chr13 48500199 48566542 PREDICTED: Dedicator of cytokinesis protein 9 GO:0005085;GO:0007264 K21853
gene-evm.TU.Chr13.1649 rna-evm.model.Chr13.1649 Chr13 48567276 48615836 PREDICTED: Dedicator of cytokinesis protein 9 GO:0005085;GO:0007264 K21853
gene-evm.TU.Chr13.165 rna-evm.model.Chr13.165 Chr13 4861958 4867459 PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase GO:0004842 K22371
gene-evm.TU.Chr13.1650 rna-evm.model.Chr13.1650 Chr13 48698701 48705333 PREDICTED: tripartite motif-containing protein 24 [EC:2.3.2.27] nan K24490

For more detailed data, you can explore the Download section to access the full dataset.