CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.161 rna-evm.model.Chr13.161 Chr13 4726663 4745348 PREDICTED: Zinc finger protein ZIC 4 GO:0003676 K09225
gene-evm.TU.Chr13.1611 rna-evm.model.Chr13.1611 Chr13 47892727 47909832 PREDICTED: Calcium-activated chloride channel regulator 1 nan K05030
gene-evm.TU.Chr13.1612 rna-evm.model.Chr13.1612 Chr13 47910177 47960700 PREDICTED: Calcium-activated chloride channel regulator 1 nan K05027
gene-evm.TU.Chr13.1615 rna-evm.model.Chr13.1615 Chr13 47877061 47975809 PREDICTED: Calcium-activated chloride channel regulator 1 nan K05030
gene-evm.TU.Chr13.1616 rna-evm.model.Chr13.1616 Chr13 47976441 48015575 PREDICTED: Calcium-activated chloride channel regulator 1 nan K05027
gene-evm.TU.Chr13.1619 rna-evm.model.Chr13.1619 Chr13 48029947 48031311 PREDICTED: E1A/CREB-binding protein [EC:2.3.1.48] nan K26737
gene-evm.TU.Chr13.162 rna-evm.model.Chr13.162 Chr13 4792762 4800260 PREDICTED: 30S ribosomal protein S6 nan K19438
gene-evm.TU.Chr13.1621 rna-evm.model.Chr13.1621 Chr13 48033735 48034911 uncharacterized protein nan K18161
gene-evm.TU.Chr13.1626 rna-evm.model.Chr13.1626 Chr13 48041459 48057458 PREDICTED: Monocarboxylate transporter 5 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.1627 rna-evm.model.Chr13.1627 Chr13 48057571 48060361 PREDICTED: Monocarboxylate transporter 12 nan K08190

For more detailed data, you can explore the Download section to access the full dataset.