CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.159 rna-evm.model.Chr13.159 Chr13 4683180 4704383 PREDICTED: Na(+)/H(+) exchanger protein 7 GO:0006812;GO:0006814;GO:0006885;GO:0015299;GO:0015385;GO:0016020;GO:0055085 K05742
gene-evm.TU.Chr13.1590 rna-evm.model.Chr13.1590 Chr13 47294384 47350527 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan K20496
gene-evm.TU.Chr13.1591 rna-evm.model.Chr13.1591 Chr13 47355932 47368226 PREDICTED: low density lipoprotein receptor-related protein 5/6 nan nan
gene-evm.TU.Chr13.1592 rna-evm.model.Chr13.1592 Chr13 47377713 47388852 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan nan
gene-evm.TU.Chr13.1593 rna-evm.model.Chr13.1593 Chr13 47405134 47409163 uncharacterized protein nan nan
gene-evm.TU.Chr13.1594 rna-evm.model.Chr13.1594 Chr13 47421276 47433304 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan nan
gene-evm.TU.Chr13.1595 rna-evm.model.Chr13.1595 Chr13 47445539 47467947 uncharacterized protein nan K12087
gene-evm.TU.Chr13.1596 rna-evm.model.Chr13.1596 Chr13 47483552 47492530 PREDICTED: Excitatory amino acid transporter 2 GO:0015293;GO:0016020 K05613
gene-evm.TU.Chr13.1597 rna-evm.model.Chr13.1597 Chr13 47499242 47502556 PREDICTED: Excitatory amino acid transporter 2 GO:0015293;GO:0016020 K05613
gene-evm.TU.Chr13.1598 rna-evm.model.Chr13.1598 Chr13 47503252 47506267 PREDICTED: Excitatory amino acid transporter GO:0015293;GO:0016020 K05613

For more detailed data, you can explore the Download section to access the full dataset.