CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1579 rna-evm.model.Chr13.1579 Chr13 47131652 47148061 PREDICTED: eiger nan K16678
gene-evm.TU.Chr13.158 rna-evm.model.Chr13.158 Chr13 4643538 4665567 PREDICTED: Sodium/hydrogen exchanger 2 GO:0006812;GO:0006814;GO:0006885;GO:0015299;GO:0015385;GO:0016020;GO:0055085 K05742
gene-evm.TU.Chr13.1580 rna-evm.model.Chr13.1580.1 Chr13 47157512 47162219 uncharacterized protein GO:0005164;GO:0006955;GO:0016020 K05474
gene-evm.TU.Chr13.1581 rna-evm.model.Chr13.1581 Chr13 47172196 47177439 PREDICTED: tumor necrosis factor ligand superfamily member 13B GO:0005164;GO:0006955;GO:0016020 K05475
gene-evm.TU.Chr13.1582 rna-evm.model.Chr13.1582 Chr13 47178852 47184564 PREDICTED: Tumor necrosis factor ligand superfamily member 13B GO:0005164;GO:0006955;GO:0016020 K16678
gene-evm.TU.Chr13.1584 rna-evm.model.Chr13.1584 Chr13 47202613 47205414 uncharacterized protein nan K05475
gene-evm.TU.Chr13.1585 rna-evm.model.Chr13.1585 Chr13 47206129 47216797 uncharacterized protein nan K16678
gene-evm.TU.Chr13.1586 rna-evm.model.Chr13.1586 Chr13 47234036 47258501 PREDICTED: Kidney mitochondrial carrier protein 1 GO:0022857;GO:0055085 K15106
gene-evm.TU.Chr13.1587 rna-evm.model.Chr13.1587 Chr13 47270303 47275713 PREDICTED: transmembrane protein 126A nan K18157
gene-evm.TU.Chr13.1589 rna-evm.model.Chr13.1589 Chr13 47281030 47291429 PREDICTED: multiple epidermal growth factor-like domains protein 10 nan K24333

For more detailed data, you can explore the Download section to access the full dataset.