CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.157 rna-evm.model.Chr13.157 Chr13 4633897 4638491 uncharacterized protein nan K19324
gene-evm.TU.Chr13.1570 rna-evm.model.Chr13.1570 Chr13 46990169 46993380 PREDICTED: Leucine-rich repeat protein soc-2 homolog GO:0005515 K23533
gene-evm.TU.Chr13.1571 rna-evm.model.Chr13.1571 Chr13 46996780 46998989 PREDICTED: Leucine-rich repeats and immunoglobulin-like domains protein 3 GO:0005515 K23533
gene-evm.TU.Chr13.1572 rna-evm.model.Chr13.1572 Chr13 46999715 47002824 PREDICTED: Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2 GO:0005515 K23533
gene-evm.TU.Chr13.1573 rna-evm.model.Chr13.1573 Chr13 47006775 47008316 PREDICTED: Leucine-rich repeat-containing G-protein coupled receptor 6 GO:0005515 K17256
gene-evm.TU.Chr13.1574 rna-evm.model.Chr13.1574 Chr13 47016993 47021652 PREDICTED: Hemicentin-1 nan K24436
gene-evm.TU.Chr13.1575 rna-evm.model.Chr13.1575 Chr13 47031826 47036512 PREDICTED: Hemicentin-1 nan K24436
gene-evm.TU.Chr13.1576 rna-evm.model.Chr13.1576 Chr13 47069170 47073836 PREDICTED: Hemicentin-1 nan K24436
gene-evm.TU.Chr13.1577 rna-evm.model.Chr13.1577 Chr13 47119596 47128954 uncharacterized protein GO:0005164;GO:0006955;GO:0016020 K05478
gene-evm.TU.Chr13.1578 rna-evm.model.Chr13.1578 Chr13 47129681 47131498 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.