CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1832 rna-evm.model.Chr1.1832 Chr1 58427019 58430582 PREDICTED: Jerky protein homolog-like GO:0003676 K07494
gene-evm.TU.Chr1.1833 rna-evm.model.Chr1.1833 Chr1 58494360 58526881 PREDICTED: Zonadhesin GO:0004222;GO:0006508 K08621
gene-evm.TU.Chr1.1835 rna-evm.model.Chr1.1835 Chr1 58545155 58546375 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr1.1836 rna-evm.model.Chr1.1836 Chr1 58546400 58549708 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr1.1837 rna-evm.model.Chr1.1837 Chr1 58554300 58554611 PREDICTED: protein ALP1-like nan K23222
gene-evm.TU.Chr1.1839 rna-evm.model.Chr1.1839 Chr1 58569716 58570312 PREDICTED: CD109 antigen nan K17890
gene-evm.TU.Chr1.1841 rna-evm.model.Chr1.1841 Chr1 58573271 58575875 PREDICTED: TM2 domain-containing protein DDB_G0278163 nan K19370
gene-evm.TU.Chr1.1842 rna-evm.model.Chr1.1842 Chr1 58587437 58600428 PREDICTED: TM2 domain-containing protein DDB_G0277895 nan K19370
gene-evm.TU.Chr1.1844 rna-evm.model.Chr1.1844 Chr1 58633824 58634638 uncharacterized protein nan K05141
gene-evm.TU.Chr1.1847 rna-evm.model.Chr1.1847 Chr1 58769271 58785207 PREDICTED: Collectin-12 nan K06468

For more detailed data, you can explore the Download section to access the full dataset.