CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1810 rna-evm.model.Chr1.1810 Chr1 57764337 57764645 PREDICTED: protein kinase D [EC:2.7.11.13] nan K14809
gene-evm.TU.Chr1.1813 rna-evm.model.Chr1.1813 Chr1 57833232 57834167 PREDICTED: coatomer subunit beta' nan K08757
gene-evm.TU.Chr1.1816 rna-evm.model.Chr1.1816 Chr1 57957770 57960470 uncharacterized protein nan K09273
gene-evm.TU.Chr1.1817 rna-evm.model.Chr1.1817 Chr1 57960587 57963962 uncharacterized protein nan nan
gene-evm.TU.Chr1.1818 rna-evm.model.Chr1.1818 Chr1 58063427 58069065 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan K00201
gene-evm.TU.Chr1.182_evm.TU.Chr1.186 rna-evm.model.Chr1.182_evm.model.Chr1.186 Chr1 5755341 5856890 PREDICTED: H(+)/Cl(-) exchange transporter 3 GO:0005247;GO:0006821;GO:0016020;GO:0055085 K05012
gene-evm.TU.Chr1.1824 rna-evm.model.Chr1.1824 Chr1 58261850 58262326 PREDICTED: protein unc-13 homolog C-like nan nan
gene-evm.TU.Chr1.1827 rna-evm.model.Chr1.1827 Chr1 58316405 58316884 PREDICTED: sporulation-specific protein 15-like nan nan
gene-evm.TU.Chr1.1828 rna-evm.model.Chr1.1828 Chr1 58377375 58380785 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan K24586
gene-evm.TU.Chr1.1831 rna-evm.model.Chr1.1831 Chr1 58424770 58426902 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K24356

For more detailed data, you can explore the Download section to access the full dataset.