CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1534 rna-evm.model.Chr13.1534 Chr13 45632087 45634644 uncharacterized protein nan nan
gene-evm.TU.Chr13.1535 rna-evm.model.Chr13.1535 Chr13 45681502 45682779 PREDICTED: Alpha-(1,3)-fucosyltransferase C GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr13.1536 rna-evm.model.Chr13.1536 Chr13 45686924 45688216 PREDICTED: Alpha-(1,3)-fucosyltransferase C GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr13.1537 rna-evm.model.Chr13.1537 Chr13 45700069 45712986 PREDICTED: Tripartite motif-containing protein 3 GO:0008270 K12021
gene-evm.TU.Chr13.1538 rna-evm.model.Chr13.1538 Chr13 45742966 45743724 PREDICTED: myotubularin-related protein 10/11/12 nan nan
gene-evm.TU.Chr13.1539 rna-evm.model.Chr13.1539 Chr13 45743814 45744303 uncharacterized protein nan K04763
gene-evm.TU.Chr13.1540 rna-evm.model.Chr13.1540 Chr13 45996654 46012804 PREDICTED: Somatostatin receptor type 4 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr13.1541 rna-evm.model.Chr13.1541 Chr13 46114563 46115498 PREDICTED: coatomer subunit beta' nan K08757
gene-evm.TU.Chr13.1544 rna-evm.model.Chr13.1544 Chr13 46293878 46308044 PREDICTED: Tumor necrosis factor ligand superfamily member 10 GO:0005164;GO:0006955;GO:0016020 K04721
gene-evm.TU.Chr13.1545 rna-evm.model.Chr13.1545 Chr13 46318067 46334183 uncharacterized protein GO:0005576;GO:0006030;GO:0008061 K23489

For more detailed data, you can explore the Download section to access the full dataset.