CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1548 rna-evm.model.Chr13.1548 Chr13 46385714 46389901 uncharacterized protein nan K24362
gene-evm.TU.Chr13.1549 rna-evm.model.Chr13.1549 Chr13 46445434 46448394 PREDICTED: BTB/POZ domain-containing protein KCTD6 GO:0005515;GO:0051260 K21916
gene-evm.TU.Chr13.155 rna-evm.model.Chr13.155 Chr13 4562143 4590483 PREDICTED: Pantothenate kinase 4 GO:0004594;GO:0005524;GO:0015937 K24265
gene-evm.TU.Chr13.1550 rna-evm.model.Chr13.1550 Chr13 46448465 46454299 PREDICTED: Lysosome-associated membrane glycoprotein 1 GO:0016020 K06528
gene-evm.TU.Chr13.1551 rna-evm.model.Chr13.1551 Chr13 46458782 46476147 PREDICTED: Trehalase GO:0004555;GO:0005991 K01194
gene-evm.TU.Chr13.1552 rna-evm.model.Chr13.1552 Chr13 46483755 46500038 PREDICTED: 2-acylglycerol O-acyltransferase 2-A GO:0016747 K14457
gene-evm.TU.Chr13.1553 rna-evm.model.Chr13.1553 Chr13 46506336 46516542 PREDICTED: F-box only protein 36 GO:0005515 K10312
gene-evm.TU.Chr13.1554 rna-evm.model.Chr13.1554 Chr13 46521592 46527011 PREDICTED: RING-box protein 2 GO:0004842;GO:0005680 K10611
gene-evm.TU.Chr13.1555 rna-evm.model.Chr13.1555 Chr13 46532074 46591140 PREDICTED: Protein strawberry notch homolog 1 GO:0006355 K26273
gene-evm.TU.Chr13.1556 rna-evm.model.Chr13.1556 Chr13 46595028 46604237 PREDICTED: Serine/Arginine-related protein 53 GO:0000380;GO:0000398 K24594

For more detailed data, you can explore the Download section to access the full dataset.