CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1507 rna-evm.model.Chr13.1507 Chr13 45001473 45005744 uncharacterized protein GO:0005164;GO:0006955;GO:0016020 K03161
gene-evm.TU.Chr13.1508 rna-evm.model.Chr13.1508 Chr13 45027525 45032326 uncharacterized protein nan K03161
gene-evm.TU.Chr13.1509 rna-evm.model.Chr13.1509 Chr13 45065698 45069149 uncharacterized protein nan K03156
gene-evm.TU.Chr13.151 rna-evm.model.Chr13.151 Chr13 4456720 4480497 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K23820
gene-evm.TU.Chr13.1510 rna-evm.model.Chr13.1510 Chr13 45079771 45083396 uncharacterized protein nan K03156
gene-evm.TU.Chr13.1511 rna-evm.model.Chr13.1511 Chr13 45098783 45101495 uncharacterized protein nan K05468
gene-evm.TU.Chr13.1512 rna-evm.model.Chr13.1512 Chr13 45118045 45119277 PREDICTED: Protein GVQW3 nan nan
gene-evm.TU.Chr13.1513 rna-evm.model.Chr13.1513 Chr13 45120731 45126730 PREDICTED: Neurocan core protein nan K06721
gene-evm.TU.Chr13.1514 rna-evm.model.Chr13.1514 Chr13 45182960 45216191 PREDICTED: Alpha-(1,3)-fucosyltransferase C GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr13.1515 rna-evm.model.Chr13.1515 Chr13 45225678 45226982 PREDICTED: Alpha-(1,3)-fucosyltransferase C GO:0006486;GO:0008417;GO:0016020 K14464

For more detailed data, you can explore the Download section to access the full dataset.