CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1473 rna-evm.model.Chr13.1473 Chr13 43843509 43844303 uncharacterized protein nan nan
gene-evm.TU.Chr13.1474 rna-evm.model.Chr13.1474 Chr13 43844408 43845529 PREDICTED: myotubularin-related protein 10/11/12 nan nan
gene-evm.TU.Chr13.1476 rna-evm.model.Chr13.1476 Chr13 43881930 43888406 PREDICTED: Transposable element Tcb2 transposase nan K17970
gene-evm.TU.Chr13.1477 rna-evm.model.Chr13.1477 Chr13 43897269 43900185 uncharacterized protein nan K17461
gene-evm.TU.Chr13.1478 rna-evm.model.Chr13.1478 Chr13 43911401 43920519 PREDICTED: GPI ethanolamine phosphate transferase 3 GO:0003824;GO:0006506;GO:0016772 K05288
gene-evm.TU.Chr13.1479 rna-evm.model.Chr13.1479 Chr13 43925233 43995085 PREDICTED: Glypican-6 GO:0009966;GO:0046658;GO:0062023 K08112
gene-evm.TU.Chr13.1480 rna-evm.model.Chr13.1480 Chr13 44009158 44019546 PREDICTED: fragile X mental retardation protein nan K20047
gene-evm.TU.Chr13.1481 rna-evm.model.Chr13.1481 Chr13 44043867 44062403 PREDICTED: Cytoplasmic protein NCK2 GO:0005515 K19862
gene-evm.TU.Chr13.1482 rna-evm.model.Chr13.1482 Chr13 44079340 44109911 PREDICTED: Alanine--tRNA ligase GO:0000166;GO:0003676;GO:0004812;GO:0004813;GO:0005524;GO:0005737;GO:0006419;GO:0043039 K01872
gene-evm.TU.Chr13.1483 rna-evm.model.Chr13.1483 Chr13 44112144 44113379 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K23027

For more detailed data, you can explore the Download section to access the full dataset.