CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1449 rna-evm.model.Chr13.1449 Chr13 43092731 43098303 PREDICTED: Choline-phosphate cytidylyltransferase B GO:0003824;GO:0009058 K00968
gene-evm.TU.Chr13.145 rna-evm.model.Chr13.145 Chr13 4143245 4156952 uncharacterized protein nan K04008
gene-evm.TU.Chr13.1450 rna-evm.model.Chr13.1450 Chr13 43124608 43137131 PREDICTED: Acid sphingomyelinase-like phosphodiesterase 3a GO:0016787 K01128
gene-evm.TU.Chr13.1451 rna-evm.model.Chr13.1451 Chr13 43140772 43160533 PREDICTED: Vacuolar segregation protein pep7 GO:0046872 K24780
gene-evm.TU.Chr13.1452 rna-evm.model.Chr13.1452 Chr13 43181218 43182519 PREDICTED: Lysophosphatidic acid receptor 6 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr13.1453 rna-evm.model.Chr13.1453 Chr13 43232475 43232870 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] nan K07239
gene-evm.TU.Chr13.1454 rna-evm.model.Chr13.1454 Chr13 43260031 43263967 PREDICTED: Nyctalopin GO:0005515 K13023
gene-evm.TU.Chr13.1455 rna-evm.model.Chr13.1455 Chr13 43429734 43430567 uncharacterized protein nan K20488
gene-evm.TU.Chr13.1456 rna-evm.model.Chr13.1456 Chr13 43430568 43434709 uncharacterized protein nan nan
gene-evm.TU.Chr13.1457 rna-evm.model.Chr13.1457 Chr13 43434876 43435680 PREDICTED: Mediator of RNA polymerase II transcription subunit 34 nan K10901

For more detailed data, you can explore the Download section to access the full dataset.