CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1458 rna-evm.model.Chr13.1458 Chr13 43436145 43437405 uncharacterized protein nan nan
gene-evm.TU.Chr13.1459 rna-evm.model.Chr13.1459 Chr13 43438760 43440112 PREDICTED: Werner syndrome ATP-dependent helicase GO:0003676;GO:0005524 K03654
gene-evm.TU.Chr13.146 rna-evm.model.Chr13.146 Chr13 4162607 4197226 uncharacterized protein nan K04008
gene-evm.TU.Chr13.1461 rna-evm.model.Chr13.1461 Chr13 43444179 43445121 uncharacterized protein nan K03556
gene-evm.TU.Chr13.1465 rna-evm.model.Chr13.1465 Chr13 43491571 43574886 PREDICTED: Patched domain-containing protein 3 GO:0005164;GO:0006955;GO:0016020;GO:0016020 K24682
gene-evm.TU.Chr13.1466 rna-evm.model.Chr13.1466 Chr13 43584717 43714584 PREDICTED: Patched domain-containing protein 3 GO:0005164;GO:0006955;GO:0016020;GO:0016020 K24682
gene-evm.TU.Chr13.1469 rna-evm.model.Chr13.1469 Chr13 43751720 43757938 PREDICTED: tumor necrosis factor ligand superfamily member 14 GO:0005164;GO:0006955;GO:0016020 K05478
gene-evm.TU.Chr13.1470 rna-evm.model.Chr13.1470 Chr13 43768195 43784575 PREDICTED: Tumor necrosis factor ligand superfamily member 15 GO:0005164;GO:0006955;GO:0016020 K05478
gene-evm.TU.Chr13.1471 rna-evm.model.Chr13.1471 Chr13 43804333 43805883 PREDICTED: Neurotensin receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04214
gene-evm.TU.Chr13.1472 rna-evm.model.Chr13.1472 Chr13 43831983 43834694 PREDICTED: Tumor necrosis factor ligand superfamily member 10 GO:0005164;GO:0006955;GO:0016020 K03161

For more detailed data, you can explore the Download section to access the full dataset.