CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.180 rna-evm.model.Chr1.180 Chr1 5748856 5752124 PREDICTED: Spore coat assembly protein ExsA nan K22870
gene-evm.TU.Chr1.1800 rna-evm.model.Chr1.1800 Chr1 57357071 57357781 uncharacterized protein nan nan
gene-evm.TU.Chr1.1803 rna-evm.model.Chr1.1803 Chr1 57435421 57441777 PREDICTED: TNF receptor-associated protein 1 nan K02342
gene-evm.TU.Chr1.1804 rna-evm.model.Chr1.1804 Chr1 57483258 57578492 uncharacterized protein nan K08632
gene-evm.TU.Chr1.1805 rna-evm.model.Chr1.1805 Chr1 57584531 57585329 PREDICTED: importin-4 nan nan
gene-evm.TU.Chr1.1806 rna-evm.model.Chr1.1806 Chr1 57590692 57593325 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan nan
gene-evm.TU.Chr1.1807 rna-evm.model.Chr1.1807 Chr1 57609496 57609795 uncharacterized protein nan nan
gene-evm.TU.Chr1.1808 rna-evm.model.Chr1.1808 Chr1 57662289 57679048 PREDICTED: mucin-2 nan K08626
gene-evm.TU.Chr1.1809 rna-evm.model.Chr1.1809 Chr1 57696668 57759703 PREDICTED: Zinc metalloproteinase-disintegrin-like MTP8 GO:0004222;GO:0006508 K08614
gene-evm.TU.Chr1.181 rna-evm.model.Chr1.181 Chr1 5752175 5752558 PREDICTED: Spore coat assembly protein ExsA nan K22870

For more detailed data, you can explore the Download section to access the full dataset.