CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1423 rna-evm.model.Chr13.1423 Chr13 42455465 42463790 PREDICTED: NFX1-type zinc finger-containing protein 1 nan K22754
gene-evm.TU.Chr13.1424 rna-evm.model.Chr13.1424 Chr13 42473969 42487458 PREDICTED: NFX1-type zinc finger-containing protein 1 nan K11701
gene-evm.TU.Chr13.1425 rna-evm.model.Chr13.1425 Chr13 42507544 42516037 PREDICTED: Nephrin GO:0005515 K24496
gene-evm.TU.Chr13.1427 rna-evm.model.Chr13.1427 Chr13 42569303 42572027 PREDICTED: vomeronasal 2 receptor GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr13.1428 rna-evm.model.Chr13.1428 Chr13 42598690 42602899 PREDICTED: tumor necrosis factor ligand superfamily member 10 GO:0005164;GO:0006955;GO:0016020 K03161
gene-evm.TU.Chr13.143 rna-evm.model.Chr13.143.2 Chr13 4074883 4103487 PREDICTED: Chordin GO:0005515 K24520
gene-evm.TU.Chr13.1430 rna-evm.model.Chr13.1430 Chr13 42652785 42657776 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr13.1431 rna-evm.model.Chr13.1431 Chr13 42683425 42693636 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr13.1433 rna-evm.model.Chr13.1433 Chr13 42750212 42760131 PREDICTED: papilin GO:0030414 K24521
gene-evm.TU.Chr13.1434 rna-evm.model.Chr13.1434 Chr13 42766646 42805732 PREDICTED: Stress response protein nst1 nan K23344

For more detailed data, you can explore the Download section to access the full dataset.