CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1435 rna-evm.model.Chr13.1435 Chr13 42806303 42811954 uncharacterized protein nan K02249
gene-evm.TU.Chr13.1436 rna-evm.model.Chr13.1436 Chr13 42824685 42834681 PREDICTED: Patched domain-containing protein 3 GO:0016020;GO:0016020;GO:0022857;GO:0055085 K24682
gene-evm.TU.Chr13.1438 rna-evm.model.Chr13.1438 Chr13 42863942 42869685 PREDICTED: Mediator of RNA polymerase II transcription subunit 4 GO:0003712;GO:0006357;GO:0016592 K15146
gene-evm.TU.Chr13.1439 rna-evm.model.Chr13.1439 Chr13 42869798 42876780 PREDICTED: Eukaryotic translation initiation factor 4E type 2 GO:0003723;GO:0003743;GO:0006413 K03259
gene-evm.TU.Chr13.1440 rna-evm.model.Chr13.1440 Chr13 42882357 42888570 uncharacterized protein nan nan
gene-evm.TU.Chr13.1442 rna-evm.model.Chr13.1442 Chr13 42932664 42957878 PREDICTED: Centrobin GO:0007099;GO:1902017 K16468
gene-evm.TU.Chr13.1443 rna-evm.model.Chr13.1443 Chr13 42978308 42978829 uncharacterized protein nan nan
gene-evm.TU.Chr13.1446 rna-evm.model.Chr13.1446 Chr13 43009536 43033886 PREDICTED: Elongation factor G, mitochondrial GO:0003924;GO:0005525 K02355
gene-evm.TU.Chr13.1447 rna-evm.model.Chr13.1447 Chr13 43038902 43040838 uncharacterized protein nan nan
gene-evm.TU.Chr13.1448 rna-evm.model.Chr13.1448 Chr13 43042779 43074303 PREDICTED: DNA polymerase alpha catalytic subunit GO:0000166;GO:0001882;GO:0003676;GO:0003677;GO:0003887;GO:0006260 K02320

For more detailed data, you can explore the Download section to access the full dataset.