CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1404 rna-evm.model.Chr13.1404 Chr13 41988035 41995948 PREDICTED: Sodium- and chloride-dependent glycine transporter 1 GO:0016020 K05038
gene-evm.TU.Chr13.1406 rna-evm.model.Chr13.1406 Chr13 42050431 42069234 PREDICTED: Ras-related protein Rab-6A GO:0003924;GO:0005525 K07893
gene-evm.TU.Chr13.141 rna-evm.model.Chr13.141 Chr13 4041900 4048114 PREDICTED: Sodium-dependent multivitamin transporter GO:0016020;GO:0022857;GO:0055085 K14386
gene-evm.TU.Chr13.1414 rna-evm.model.Chr13.1414 Chr13 42123954 42133262 PREDICTED: Zinc finger and BTB domain-containing protein 41 GO:0003676 K09186
gene-evm.TU.Chr13.1415 rna-evm.model.Chr13.1415 Chr13 42151876 42161988 PREDICTED: Heparan-sulfate 6-O-sulfotransferase 1 GO:0008146;GO:0016020 K02514
gene-evm.TU.Chr13.1416 rna-evm.model.Chr13.1416 Chr13 42165582 42179954 uncharacterized protein nan nan
gene-evm.TU.Chr13.1417 rna-evm.model.Chr13.1417 Chr13 42182332 42184853 PREDICTED: Otolin-1-A nan K23284
gene-evm.TU.Chr13.1419 rna-evm.model.Chr13.1419 Chr13 42273354 42290658 PREDICTED: E3 ubiquitin-protein ligase RBBP6 [EC:2.3.2.27] nan K11722
gene-evm.TU.Chr13.142 rna-evm.model.Chr13.142 Chr13 4052867 4072802 PREDICTED: Sodium-dependent multivitamin transporter GO:0016020;GO:0022857;GO:0055085 K14386
gene-evm.TU.Chr13.1420 rna-evm.model.Chr13.1420 Chr13 42296029 42298255 PREDICTED: LHFPL tetraspan subfamily member 6 protein nan K23893

For more detailed data, you can explore the Download section to access the full dataset.