CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1381 rna-evm.model.Chr13.1381 Chr13 41559426 41575440 PREDICTED: Tubulin beta chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07375
gene-evm.TU.Chr13.1382 rna-evm.model.Chr13.1382 Chr13 41579699 41592113 PREDICTED: Coiled-coil domain-containing protein 39 GO:0003341;GO:0005930;GO:0036159 K23729
gene-evm.TU.Chr13.1383 rna-evm.model.Chr13.1383 Chr13 41595410 41613457 PREDICTED: Histone deacetylase complex subunit SAP130 GO:0006355 K19192
gene-evm.TU.Chr13.1384 rna-evm.model.Chr13.1384 Chr13 41616732 41630566 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08180
gene-evm.TU.Chr13.1385 rna-evm.model.Chr13.1385 Chr13 41656550 41684525 PREDICTED: Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha GO:0005509 K11583
gene-evm.TU.Chr13.1386 rna-evm.model.Chr13.1386 Chr13 41693678 41701153 PREDICTED: Presenilins-associated rhomboid-like protein, mitochondrial GO:0004252;GO:0016020 K09650
gene-evm.TU.Chr13.1387 rna-evm.model.Chr13.1387.1 Chr13 41701391 41729580 PREDICTED: Conserved oligomeric Golgi complex subunit 3 GO:0005801;GO:0006886;GO:0016020 K20290
gene-evm.TU.Chr13.1388 rna-evm.model.Chr13.1388 Chr13 41731834 41738697 PREDICTED: Eukaryotic initiation factor 4A GO:0003676;GO:0005524 K03257
gene-evm.TU.Chr13.1389 rna-evm.model.Chr13.1389 Chr13 41741493 41743832 PREDICTED: Protein slit GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr13.139 rna-evm.model.Chr13.139 Chr13 4017952 4027625 PREDICTED: Sodium-coupled monocarboxylate transporter 1 GO:0016020;GO:0022857;GO:0055085 K14386

For more detailed data, you can explore the Download section to access the full dataset.