CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1370 rna-evm.model.Chr13.1370 Chr13 41063762 41064508 PREDICTED: Myb-related transcription factor, partner of profilin GO:0005634;GO:0006915 K23221
gene-evm.TU.Chr13.1371 rna-evm.model.Chr13.1371 Chr13 41067436 41068518 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr13.1372 rna-evm.model.Chr13.1372 Chr13 41197025 41198876 PREDICTED: Iduronate 2-sulfatase GO:0008484 K01136
gene-evm.TU.Chr13.1373 rna-evm.model.Chr13.1373 Chr13 41232853 41326312 PREDICTED: BCL-6 corepressor GO:0005515 K23215
gene-evm.TU.Chr13.1375 rna-evm.model.Chr13.1375 Chr13 41374104 41375432 PREDICTED: Pogo transposable element with KRAB domain GO:0003676;GO:0003677 K22594
gene-evm.TU.Chr13.1377 rna-evm.model.Chr13.1377 Chr13 41400537 41498554 PREDICTED: TSC22 domain family protein 3 GO:0003700;GO:0006355 K25550
gene-evm.TU.Chr13.1378 rna-evm.model.Chr13.1378 Chr13 41506779 41511180 PREDICTED: 60S ribosomal protein L35a GO:0003735;GO:0005840;GO:0006412 K02917
gene-evm.TU.Chr13.1379 rna-evm.model.Chr13.1379 Chr13 41517142 41527576 PREDICTED: Dynein regulatory complex protein 9 GO:0005515 K24841
gene-evm.TU.Chr13.138 rna-evm.model.Chr13.138 Chr13 4014169 4016324 uncharacterized protein nan K21842
gene-evm.TU.Chr13.1380 rna-evm.model.Chr13.1380 Chr13 41533348 41543855 PREDICTED: Protein phosphatase 1L GO:0003824;GO:0004722;GO:0006470 K17506

For more detailed data, you can explore the Download section to access the full dataset.