CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1357 rna-evm.model.Chr13.1357 Chr13 40660915 40661154 PREDICTED: ATP-dependent DNA helicase RecQ [EC:3.6.4.12] nan K10899
gene-evm.TU.Chr13.1358 rna-evm.model.Chr13.1358 Chr13 40661730 40667933 PREDICTED: Mannose-P-dolichol utilization defect 1 protein nan K09660
gene-evm.TU.Chr13.136 rna-evm.model.Chr13.136 Chr13 3969802 3998974 uncharacterized protein nan K20298
gene-evm.TU.Chr13.1360 rna-evm.model.Chr13.1360 Chr13 40681543 40690975 uncharacterized protein nan K08800
gene-evm.TU.Chr13.1363 rna-evm.model.Chr13.1363 Chr13 40757821 40764044 PREDICTED: myosin heavy chain nan K22257
gene-evm.TU.Chr13.1364 rna-evm.model.Chr13.1364 Chr13 40787462 40788970 PREDICTED: Iduronate 2-sulfatase GO:0008484 K01136
gene-evm.TU.Chr13.1367 rna-evm.model.Chr13.1367 Chr13 40835862 40839032 PREDICTED: solute carrier family 23 (nucleobase transporter), member 1/2 nan K07483
gene-evm.TU.Chr13.1368 rna-evm.model.Chr13.1368 Chr13 40849259 40854126 PREDICTED: Monocarboxylate transporter 14 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.1369 rna-evm.model.Chr13.1369 Chr13 40998662 41003246 PREDICTED: Monocarboxylate transporter 14 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.137 rna-evm.model.Chr13.137 Chr13 4000262 4009896 PREDICTED: Sodium-coupled monocarboxylate transporter 1 GO:0016020;GO:0022857;GO:0055085 K14386

For more detailed data, you can explore the Download section to access the full dataset.