CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1342 rna-evm.model.Chr13.1342 Chr13 40161014 40219679 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K03900
gene-evm.TU.Chr13.1344 rna-evm.model.Chr13.1344 Chr13 40281469 40300745 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan nan
gene-evm.TU.Chr13.1346 rna-evm.model.Chr13.1346 Chr13 40379036 40399339 PREDICTED: Calpain-5 GO:0004198;GO:0006508 K08574
gene-evm.TU.Chr13.1347 rna-evm.model.Chr13.1347 Chr13 40413047 40419190 uncharacterized protein nan nan
gene-evm.TU.Chr13.1348 rna-evm.model.Chr13.1348 Chr13 40462310 40502939 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K06252
gene-evm.TU.Chr13.1350 rna-evm.model.Chr13.1350 Chr13 40524039 40550270 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K06252
gene-evm.TU.Chr13.1351 rna-evm.model.Chr13.1351 Chr13 40556399 40571479 PREDICTED: Sulfotransferase 4A1 GO:0008146 K01016
gene-evm.TU.Chr13.1352 rna-evm.model.Chr13.1352 Chr13 40589927 40599314 PREDICTED: 60S ribosomal protein L8 GO:0003735;GO:0005840;GO:0006412 K02938
gene-evm.TU.Chr13.1354 rna-evm.model.Chr13.1354.1 Chr13 40607573 40629858 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270;GO:0046872 K12021
gene-evm.TU.Chr13.1355 rna-evm.model.Chr13.1355 Chr13 40632978 40634066 PREDICTED: Beta-2 adrenergic receptor GO:0004930;GO:0007186;GO:0016020 K04142

For more detailed data, you can explore the Download section to access the full dataset.