CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1311 rna-evm.model.Chr13.1311.1 Chr13 39175452 39197656 PREDICTED: E3 ubiquitin-protein ligase RNF13 GO:0008270 K15692
gene-evm.TU.Chr13.1312 rna-evm.model.Chr13.1312 Chr13 39205851 39216531 PREDICTED: Neurogenic locus Notch protein GO:0005509 K06052
gene-evm.TU.Chr13.1313 rna-evm.model.Chr13.1313 Chr13 39219017 39245352 PREDICTED: Kyphoscoliosis peptidase nan K24456
gene-evm.TU.Chr13.1314 rna-evm.model.Chr13.1314 Chr13 39241599 39256321 PREDICTED: Peptide methionine sulfoxide reductase MsrA GO:0008113;GO:0055114 K07304
gene-evm.TU.Chr13.1315 rna-evm.model.Chr13.1315 Chr13 39260004 39262839 PREDICTED: Peptide methionine sulfoxide reductase MsrA 2 GO:0008113;GO:0055114 K07304
gene-evm.TU.Chr13.1316 rna-evm.model.Chr13.1316 Chr13 39267719 39333427 PREDICTED: glypican 5 GO:0009966;GO:0046658;GO:0062023 K08111
gene-evm.TU.Chr13.1317 rna-evm.model.Chr13.1317 Chr13 39334224 39362435 PREDICTED: glypican 5 GO:0030509;GO:0009966;GO:0016055;GO:0046658;GO:0062023 K08111
gene-evm.TU.Chr13.1318 rna-evm.model.Chr13.1318 Chr13 39372956 39383916 PREDICTED: DnaJ homolog subfamily C member 3 GO:0005515 K09523
gene-evm.TU.Chr13.1319 rna-evm.model.Chr13.1319 Chr13 39388797 39419561 PREDICTED: Zinc finger protein DZIP1L GO:0003676 K16470
gene-evm.TU.Chr13.132 rna-evm.model.Chr13.132 Chr13 3914335 3922650 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan nan

For more detailed data, you can explore the Download section to access the full dataset.