CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1781 rna-evm.model.Chr1.1781 Chr1 56806888 56807655 PREDICTED: Probable G-protein coupled receptor AH9.1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr1.1789_evm.TU.Chr1.1790 rna-evm.model.Chr1.1789_evm.model.Chr1.1790 Chr1 56890306 56918716 PREDICTED: Zinc finger protein GLIS2 GO:0003676 K09233
gene-evm.TU.Chr1.179 rna-evm.model.Chr1.179 Chr1 5653059 5669079 PREDICTED: START domain-containing protein 10 GO:0008289 K24142
gene-evm.TU.Chr1.1791 rna-evm.model.Chr1.1791 Chr1 56922337 56924160 uncharacterized protein nan K10804
gene-evm.TU.Chr1.1792_evm.TU.Chr1.1793 rna-evm.model.Chr1.1792_evm.model.Chr1.1793 Chr1 56931514 56986476 PREDICTED: Ribonucleoside-diphosphate reductase large subunit GO:0004748;GO:0005524;GO:0006260;GO:0055114 K10807
gene-evm.TU.Chr1.1794 rna-evm.model.Chr1.1794 Chr1 56990241 56999082 uncharacterized protein nan K13073
gene-evm.TU.Chr1.1795 rna-evm.model.Chr1.1795 Chr1 57000304 57003623 PREDICTED: Opsin-5 GO:0004930;GO:0007186;GO:0016020 K08385
gene-evm.TU.Chr1.1796 rna-evm.model.Chr1.1796 Chr1 57026906 57044007 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs adt-2 GO:0004222;GO:0006508 K08621
gene-evm.TU.Chr1.1797 rna-evm.model.Chr1.1797 Chr1 57187918 57188120 uncharacterized protein nan nan
gene-evm.TU.Chr1.1799 rna-evm.model.Chr1.1799 Chr1 57286958 57306211 PREDICTED: a disintegrin and metalloproteinase with thrombospondin motifs 16 [EC:3.4.24.-] nan nan

For more detailed data, you can explore the Download section to access the full dataset.