CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.130 rna-evm.model.Chr13.130 Chr13 3853251 3891746 uncharacterized protein nan K18136
gene-evm.TU.Chr13.1300 rna-evm.model.Chr13.1300.1 Chr13 38743546 38752155 PREDICTED: Calcium-activated chloride channel regulator 4 nan K05027
gene-evm.TU.Chr13.1301 rna-evm.model.Chr13.1301 Chr13 38763094 38763498 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr13.1302 rna-evm.model.Chr13.1302 Chr13 38785405 38807438 PREDICTED: 14-3-3 protein gamma-2 GO:0019904 K16197
gene-evm.TU.Chr13.1303 rna-evm.model.Chr13.1303 Chr13 38813584 38814928 PREDICTED: 14-3-3 protein beta/alpha-1 GO:0019904 K16198
gene-evm.TU.Chr13.1304 rna-evm.model.Chr13.1304 Chr13 38820232 38851722 PREDICTED: Run domain Beclin-1-interacting and cysteine-rich domain-containing protein nan K19330
gene-evm.TU.Chr13.1306 rna-evm.model.Chr13.1306 Chr13 38859051 38886015 uncharacterized protein GO:0005515;GO:0007165 K10130
gene-evm.TU.Chr13.1308_evm.TU.Chr13.1307 rna-evm.model.Chr13.1308_evm.model.Chr13.1307 Chr13 38889495 38980054 PREDICTED: Monocarboxylate transporter 12-B GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.131 rna-evm.model.Chr13.131 Chr13 3903884 3910077 uncharacterized protein nan K17592
gene-evm.TU.Chr13.1310 rna-evm.model.Chr13.1310 Chr13 39006893 39077795 PREDICTED: Multidrug resistance-associated protein 4 GO:0005254;GO:0005524;GO:0006811;GO:0016020;GO:0016020;GO:0042626;GO:0055085 K05673

For more detailed data, you can explore the Download section to access the full dataset.