CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1288 rna-evm.model.Chr13.1288 Chr13 38449882 38453387 uncharacterized protein nan K05478
gene-evm.TU.Chr13.129 rna-evm.model.Chr13.129 Chr13 3817823 3827649 uncharacterized protein nan nan
gene-evm.TU.Chr13.1290 rna-evm.model.Chr13.1290 Chr13 38500499 38503037 PREDICTED: Peroxisome biogenesis factor 1 nan K13338
gene-evm.TU.Chr13.1291 rna-evm.model.Chr13.1291 Chr13 38514045 38514809 uncharacterized protein nan K23460
gene-evm.TU.Chr13.1292 rna-evm.model.Chr13.1292 Chr13 38516352 38519020 uncharacterized protein nan K05053
gene-evm.TU.Chr13.1293 rna-evm.model.Chr13.1293 Chr13 38540781 38542135 PREDICTED: Mannan polymerase complex subunit MNN9 nan K05529
gene-evm.TU.Chr13.1294 rna-evm.model.Chr13.1294 Chr13 38545218 38547573 PREDICTED: Mannan polymerase complex subunit mnn9 nan K05529
gene-evm.TU.Chr13.1296 rna-evm.model.Chr13.1296 Chr13 38569446 38572528 PREDICTED: Transcription factor Sox-14 GO:0006355 K09267
gene-evm.TU.Chr13.1298 rna-evm.model.Chr13.1298 Chr13 38648453 38712629 PREDICTED: UDP-glucose:glycoprotein glucosyltransferase 1 GO:0003980;GO:0006486 K11718
gene-evm.TU.Chr13.1299 rna-evm.model.Chr13.1299 Chr13 38714023 38719036 uncharacterized protein nan K16923

For more detailed data, you can explore the Download section to access the full dataset.