CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1250 rna-evm.model.Chr13.1250 Chr13 37742862 37746004 PREDICTED: Histidine triad nucleotide-binding protein 3 GO:0003824 K12150
gene-evm.TU.Chr13.1251 rna-evm.model.Chr13.1251 Chr13 37748497 37750665 PREDICTED: Aldo-keto reductase family 1 member A1 GO:0016491;GO:0055114 K00011
gene-evm.TU.Chr13.1252 rna-evm.model.Chr13.1252 Chr13 37753852 37762075 PREDICTED: Elongation factor 1-alpha 1 GO:0003924;GO:0005525 K03231
gene-evm.TU.Chr13.1253 rna-evm.model.Chr13.1253 Chr13 37786535 37789487 uncharacterized protein GO:0005164;GO:0006955;GO:0016020 K03156
gene-evm.TU.Chr13.1254 rna-evm.model.Chr13.1254 Chr13 37794166 37797668 uncharacterized protein nan K05478
gene-evm.TU.Chr13.1256 rna-evm.model.Chr13.1256 Chr13 37809807 37846607 PREDICTED: Peroxisome biogenesis factor 1 GO:0005524;GO:0005778;GO:0006625;GO:0016887 K13338
gene-evm.TU.Chr13.1259 rna-evm.model.Chr13.1259 Chr13 37877640 37878996 PREDICTED: Mannan polymerase complex subunit MNN9 nan K05529
gene-evm.TU.Chr13.1260 rna-evm.model.Chr13.1260 Chr13 37882267 37884640 PREDICTED: Mannan polymerase complex subunit mnn9 nan K05529
gene-evm.TU.Chr13.1263 rna-evm.model.Chr13.1263 Chr13 37908358 37910963 PREDICTED: Transcription factor Sox-14 GO:0006355 K09267
gene-evm.TU.Chr13.1265 rna-evm.model.Chr13.1265 Chr13 37979823 38020530 PREDICTED: UDP-glucose:glycoprotein glucosyltransferase 1 GO:0003980;GO:0006486 K11718

For more detailed data, you can explore the Download section to access the full dataset.