CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1238 rna-evm.model.Chr13.1238 Chr13 37280615 37287691 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr13.1239 rna-evm.model.Chr13.1239 Chr13 37378024 37387426 PREDICTED: Opsin-5 GO:0004930;GO:0007186;GO:0016020 K08385
gene-evm.TU.Chr13.124 rna-evm.model.Chr13.124 Chr13 3763925 3764896 uncharacterized protein nan K00253
gene-evm.TU.Chr13.1241 rna-evm.model.Chr13.1241 Chr13 37446511 37470546 PREDICTED: la-related protein 4 nan nan
gene-evm.TU.Chr13.1242 rna-evm.model.Chr13.1242 Chr13 37481910 37487299 uncharacterized protein nan nan
gene-evm.TU.Chr13.1243 rna-evm.model.Chr13.1243 Chr13 37487316 37522591 PREDICTED: Unconventional myosin-VIIa GO:0005856 K10359
gene-evm.TU.Chr13.1245 rna-evm.model.Chr13.1245 Chr13 37608562 37620302 PREDICTED: Carbohydrate sulfotransferase 15 GO:0008146 K08106
gene-evm.TU.Chr13.1246 rna-evm.model.Chr13.1246 Chr13 37622983 37626578 PREDICTED: Excitatory amino acid transporter 3 GO:0015293;GO:0016020 K05613
gene-evm.TU.Chr13.1248 rna-evm.model.Chr13.1248 Chr13 37670309 37672229 uncharacterized protein nan K20480
gene-evm.TU.Chr13.1249 rna-evm.model.Chr13.1249 Chr13 37678116 37736190 PREDICTED: Rho guanine nucleotide exchange factor 7 GO:0005085;GO:0005515;GO:0035023 K13710

For more detailed data, you can explore the Download section to access the full dataset.