CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1228 rna-evm.model.Chr13.1228 Chr13 37146774 37147348 uncharacterized protein nan K05146
gene-evm.TU.Chr13.1229 rna-evm.model.Chr13.1229 Chr13 37151488 37160487 PREDICTED: Orexin receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr13.123 rna-evm.model.Chr13.123 Chr13 3761815 3762993 PREDICTED: reverse transcriptase family protein, partial nan nan
gene-evm.TU.Chr13.1231 rna-evm.model.Chr13.1231 Chr13 37161272 37168511 PREDICTED: Myo-inositol 2-dehydrogenase GO:0016491;GO:0055114 K00010
gene-evm.TU.Chr13.1232 rna-evm.model.Chr13.1232 Chr13 37171301 37184501 PREDICTED: DNA replication licensing factor mcm7 GO:0003677;GO:0003678;GO:0005524;GO:0006270;GO:0042555 K02210
gene-evm.TU.Chr13.1233 rna-evm.model.Chr13.1233 Chr13 37196055 37203541 PREDICTED: Neurocan core protein GO:0005509 K06468
gene-evm.TU.Chr13.1234 rna-evm.model.Chr13.1234 Chr13 37206605 37208521 PREDICTED: Caprin-2 nan K24236
gene-evm.TU.Chr13.1235 rna-evm.model.Chr13.1235 Chr13 37223805 37224818 uncharacterized protein nan nan
gene-evm.TU.Chr13.1236 rna-evm.model.Chr13.1236 Chr13 37242489 37257173 uncharacterized protein nan K06568
gene-evm.TU.Chr13.1237 rna-evm.model.Chr13.1237 Chr13 37264201 37265711 uncharacterized protein nan K19012

For more detailed data, you can explore the Download section to access the full dataset.