CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1176 rna-evm.model.Chr13.1176 Chr13 35209166 35221882 PREDICTED: E3 ubiquitin-protein ligase TRIM71 GO:0008270;GO:0046872 K12021
gene-evm.TU.Chr13.1177 rna-evm.model.Chr13.1177 Chr13 35223786 35227157 PREDICTED: Thiamine transporter 2 GO:0016020;GO:0051180;GO:0090482 K14610
gene-evm.TU.Chr13.1178 rna-evm.model.Chr13.1178 Chr13 35254832 35288047 PREDICTED: Uncharacterized protein YwnB nan K05901
gene-evm.TU.Chr13.1179 rna-evm.model.Chr13.1179 Chr13 35288640 35290716 PREDICTED: Flavin reductase (NADPH) nan K05901
gene-evm.TU.Chr13.118 rna-evm.model.Chr13.118 Chr13 3558947 3577170 uncharacterized protein nan nan
gene-evm.TU.Chr13.1180 rna-evm.model.Chr13.1180 Chr13 35292339 35293725 PREDICTED: Major egg antigen nan K09542
gene-evm.TU.Chr13.1181 rna-evm.model.Chr13.1181 Chr13 35299066 35313921 PREDICTED: Flavin reductase (NADPH) nan K05901
gene-evm.TU.Chr13.1183 rna-evm.model.Chr13.1183 Chr13 35325062 35334425 PREDICTED: Ankyrin repeat, PH and SEC7 domain containing protein secG GO:0005515 K10338
gene-evm.TU.Chr13.1184 rna-evm.model.Chr13.1184 Chr13 35338504 35404540 PREDICTED: Probable phospholipid-transporting ATPase IF GO:0000287;GO:0140326;GO:0005524;GO:0015914;GO:0016020 K26934
gene-evm.TU.Chr13.1189 rna-evm.model.Chr13.1189 Chr13 35537930 35538923 PREDICTED: Insoluble matrix shell protein 2 nan nan

For more detailed data, you can explore the Download section to access the full dataset.