CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.119 rna-evm.model.Chr13.119 Chr13 3646297 3649341 uncharacterized protein nan K23729
gene-evm.TU.Chr13.1193 rna-evm.model.Chr13.1193 Chr13 35628496 35637483 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K04239
gene-evm.TU.Chr13.1194 rna-evm.model.Chr13.1194 Chr13 35643067 35659951 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0007631;GO:0016020;GO:0016499 K04239
gene-evm.TU.Chr13.1195 rna-evm.model.Chr13.1195 Chr13 35719454 35721638 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr13.1196 rna-evm.model.Chr13.1196 Chr13 35907259 35907463 uncharacterized protein nan nan
gene-evm.TU.Chr13.1198 rna-evm.model.Chr13.1198 Chr13 36000467 36056464 PREDICTED: Eukaryotic translation initiation factor 2A GO:0003743;GO:0006413 K15026
gene-evm.TU.Chr13.120 rna-evm.model.Chr13.120 Chr13 3651082 3662829 uncharacterized protein GO:0004842;GO:0016567;GO:0046872 K10645
gene-evm.TU.Chr13.1200 rna-evm.model.Chr13.1200 Chr13 36085006 36094124 PREDICTED: Vacuolar protein sorting-associated protein 4B GO:0005524 K12196
gene-evm.TU.Chr13.1201 rna-evm.model.Chr13.1201 Chr13 36098714 36112651 PREDICTED: ribosome biogenesis protein ENP2 nan nan
gene-evm.TU.Chr13.1202 rna-evm.model.Chr13.1202 Chr13 36113605 36128090 PREDICTED: G2/mitotic-specific cyclin-B3 GO:0000079;GO:0005634;GO:0010389;GO:0019901 K21771

For more detailed data, you can explore the Download section to access the full dataset.