CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1203 rna-evm.model.Chr13.1203 Chr13 36158352 36164891 PREDICTED: TNF, partial nan K05478
gene-evm.TU.Chr13.1208 rna-evm.model.Chr13.1208 Chr13 36704777 36705833 PREDICTED: tripartite motif-containing protein 2/3 nan K13655
gene-evm.TU.Chr13.1210 rna-evm.model.Chr13.1210 Chr13 36708298 36713426 PREDICTED: tripartite motif-containing protein 2/3 nan K26041
gene-evm.TU.Chr13.1213 rna-evm.model.Chr13.1213 Chr13 36719990 36731969 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr13.1214 rna-evm.model.Chr13.1214 Chr13 36762284 36763764 PREDICTED: Jerky protein homolog-like GO:0003676 K26274
gene-evm.TU.Chr13.1215 rna-evm.model.Chr13.1215 Chr13 36769050 36809072 uncharacterized protein GO:0005164;GO:0006955;GO:0016020 K03156
gene-evm.TU.Chr13.1216 rna-evm.model.Chr13.1216 Chr13 36822915 36851358 uncharacterized protein GO:0005164;GO:0006955;GO:0016020 K03156
gene-evm.TU.Chr13.1217 rna-evm.model.Chr13.1217 Chr13 36871796 36872802 PREDICTED: protein unc-13 A/B/C nan K19472
gene-evm.TU.Chr13.1219 rna-evm.model.Chr13.1219 Chr13 36919703 36951427 uncharacterized protein GO:0005164;GO:0005576;GO:0006915;GO:0006955;GO:0007165;GO:0016020 K03156
gene-evm.TU.Chr13.1223 rna-evm.model.Chr13.1223 Chr13 37025830 37027297 PREDICTED: Substance-K receptor GO:0004930;GO:0007186;GO:0016020 K04194

For more detailed data, you can explore the Download section to access the full dataset.