CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1771 rna-evm.model.Chr1.1771 Chr1 56473016 56475145 uncharacterized protein nan K22238
gene-evm.TU.Chr1.1772 rna-evm.model.Chr1.1772.2 Chr1 56512580 56661349 PREDICTED: Protocadherin Fat 1 GO:0005509;GO:0007156;GO:0016020 K16506
gene-evm.TU.Chr1.1773 rna-evm.model.Chr1.1773 Chr1 56666724 56691243 uncharacterized protein nan K08473
gene-evm.TU.Chr1.1774 rna-evm.model.Chr1.1774 Chr1 56715027 56715828 uncharacterized protein nan nan
gene-evm.TU.Chr1.1775 rna-evm.model.Chr1.1775 Chr1 56755151 56767631 PREDICTED: Ice nucleation protein InaA nan K22022
gene-evm.TU.Chr1.1776 rna-evm.model.Chr1.1776 Chr1 56769757 56773055 uncharacterized protein nan K00717
gene-evm.TU.Chr1.1778 rna-evm.model.Chr1.1778 Chr1 56778435 56783134 PREDICTED: Cysteine and tyrosine-rich protein 1 nan K11244
gene-evm.TU.Chr1.1779 rna-evm.model.Chr1.1779 Chr1 56794218 56794958 PREDICTED: cysteinyl leukotriene receptor 1 GO:0004930;GO:0007186;GO:0016020 K26202
gene-evm.TU.Chr1.178 rna-evm.model.Chr1.178 Chr1 5640373 5649419 PREDICTED: Autophagy-related protein 101 GO:0006914 K19730
gene-evm.TU.Chr1.1780 rna-evm.model.Chr1.1780 Chr1 56801274 56802041 PREDICTED: Mu-type opioid receptor GO:0008528;GO:0016020 K26202

For more detailed data, you can explore the Download section to access the full dataset.