CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1165 rna-evm.model.Chr13.1165 Chr13 34796576 34801357 PREDICTED: Insoluble matrix shell protein 5 GO:0005509 K23901
gene-evm.TU.Chr13.1166 rna-evm.model.Chr13.1166 Chr13 34814437 34820818 uncharacterized protein nan nan
gene-evm.TU.Chr13.1167 rna-evm.model.Chr13.1167 Chr13 34879732 34893115 PREDICTED: ATP-dependent RNA helicase DEAH12, chloroplastic GO:0003676;GO:0004386;GO:0005524 K12818
gene-evm.TU.Chr13.1168 rna-evm.model.Chr13.1168 Chr13 34917616 34920426 PREDICTED: ATP-dependent RNA helicase DEAH12, chloroplastic GO:0003676 K11968
gene-evm.TU.Chr13.1169 rna-evm.model.Chr13.1169 Chr13 34920508 34922933 PREDICTED: ATP-dependent RNA helicase dhx8 GO:0003676;GO:0004386;GO:0005524 K12818
gene-evm.TU.Chr13.117 rna-evm.model.Chr13.117 Chr13 3519796 3522264 uncharacterized protein nan K10948
gene-evm.TU.Chr13.1170 rna-evm.model.Chr13.1170 Chr13 34922987 34923268 uncharacterized protein nan nan
gene-evm.TU.Chr13.1171_evm.TU.Chr13.1174 rna-evm.model.Chr13.1171_evm.model.Chr13.1174 Chr13 35035222 35147933 PREDICTED: Traf2 and NCK-interacting protein kinase GO:0004672;GO:0005524;GO:0006468 K08840
gene-evm.TU.Chr13.1173 rna-evm.model.Chr13.1173 Chr13 35090029 35091362 uncharacterized protein nan K18743
gene-evm.TU.Chr13.1175 rna-evm.model.Chr13.1175 Chr13 35205832 35206656 PREDICTED: Protein FAM43A GO:0005515 K12474

For more detailed data, you can explore the Download section to access the full dataset.