CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1151 rna-evm.model.Chr13.1151 Chr13 34552405 34556019 PREDICTED: Tubulin beta chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07375
gene-evm.TU.Chr13.1152 rna-evm.model.Chr13.1152 Chr13 34560414 34588512 PREDICTED: Hemicentin-1 GO:0005515 K16857
gene-evm.TU.Chr13.1154 rna-evm.model.Chr13.1154 Chr13 34640914 34654395 PREDICTED: Protein FAM124A nan K08240
gene-evm.TU.Chr13.1156 rna-evm.model.Chr13.1156 Chr13 34699421 34702215 uncharacterized protein nan nan
gene-evm.TU.Chr13.1157 rna-evm.model.Chr13.1157 Chr13 34708889 34724639 PREDICTED: Importin subunit alpha-4 GO:0005515;GO:0006606;GO:0061608 K23583
gene-evm.TU.Chr13.1158 rna-evm.model.Chr13.1158 Chr13 34725097 34732045 PREDICTED: Emopamil-binding protein-like GO:0016020;GO:0016125;GO:0047750 K01824
gene-evm.TU.Chr13.1159 rna-evm.model.Chr13.1159 Chr13 34737710 34738940 PREDICTED: Tenascin-R nan K25356
gene-evm.TU.Chr13.1160 rna-evm.model.Chr13.1160 Chr13 34741308 34743567 PREDICTED: Transcription intermediary factor 1-beta GO:0008270 K12026
gene-evm.TU.Chr13.1163 rna-evm.model.Chr13.1163 Chr13 34765791 34771366 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.1164 rna-evm.model.Chr13.1164 Chr13 34782501 34788497 PREDICTED: Insoluble matrix shell protein 5 GO:0005509 K13448

For more detailed data, you can explore the Download section to access the full dataset.