CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1141 rna-evm.model.Chr13.1141 Chr13 34236897 34242275 PREDICTED: Lactadherin nan K17253
gene-evm.TU.Chr13.1142 rna-evm.model.Chr13.1142 Chr13 34280024 34291751 PREDICTED: Glycine-rich domain-containing protein 2 nan K12598
gene-evm.TU.Chr13.1143 rna-evm.model.Chr13.1143 Chr13 34309060 34309594 uncharacterized protein nan nan
gene-evm.TU.Chr13.1145 rna-evm.model.Chr13.1145.4 Chr13 34354864 34390922 PREDICTED: Glycogenin-1 GO:0016757 K00750
gene-evm.TU.Chr13.1146 rna-evm.model.Chr13.1146 Chr13 34394482 34406196 PREDICTED: Chromatin complexes subunit BAP18 GO:0016589;GO:0071339 K23406
gene-evm.TU.Chr13.1147 rna-evm.model.Chr13.1147.5 Chr13 34417614 34432154 PREDICTED: Transcriptional coactivator YAP1 GO:0005515 K16687
gene-evm.TU.Chr13.1148 rna-evm.model.Chr13.1148 Chr13 34441946 34471269 PREDICTED: Protein ECT2 GO:0005085;GO:0005085;GO:0005096;GO:0005634;GO:0005737;GO:0035023;GO:0043547;GO:2000431 K20704
gene-evm.TU.Chr13.1149 rna-evm.model.Chr13.1149 Chr13 34479103 34492305 PREDICTED: Putative lipoyltransferase 2, mitochondrial GO:0036211 K23735
gene-evm.TU.Chr13.115 rna-evm.model.Chr13.115 Chr13 3465612 3492144 PREDICTED: knob-associated histidine-rich protein, putative (KAHRP) nan K25590
gene-evm.TU.Chr13.1150 rna-evm.model.Chr13.1150 Chr13 34501333 34551451 PREDICTED: BRCA2-interacting transcriptional repressor EMSY GO:0005515;GO:0006355 K25790

For more detailed data, you can explore the Download section to access the full dataset.