CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1131 rna-evm.model.Chr13.1131 Chr13 33893476 33921989 uncharacterized protein nan K10750
gene-evm.TU.Chr13.1132 rna-evm.model.Chr13.1132 Chr13 33923788 33931629 PREDICTED: Caspase-3 GO:0004197;GO:0006508;GO:0008234 K02187
gene-evm.TU.Chr13.1133 rna-evm.model.Chr13.1133 Chr13 33937633 33955015 uncharacterized protein nan K25956
gene-evm.TU.Chr13.1134 rna-evm.model.Chr13.1134 Chr13 33967479 33996359 PREDICTED: Prothoracicostatic peptide nan K26204
gene-evm.TU.Chr13.1135 rna-evm.model.Chr13.1135 Chr13 34019372 34022112 PREDICTED: vomeronasal 2 receptor nan K04763
gene-evm.TU.Chr13.1137 rna-evm.model.Chr13.1137 Chr13 34130726 34137816 PREDICTED: Lactadherin GO:0005509 K24464
gene-evm.TU.Chr13.1138 rna-evm.model.Chr13.1138 Chr13 34138826 34154449 PREDICTED: 2-oxoglutarate-dependent dioxygenase citB GO:0016491;GO:0055114 K04125
gene-evm.TU.Chr13.1139 rna-evm.model.Chr13.1139 Chr13 34216497 34228617 PREDICTED: Guanylate cyclase soluble subunit beta-2 GO:0004383;GO:0006182;GO:0009190;GO:0016849;GO:0020037;GO:0035556 K12319
gene-evm.TU.Chr13.114 rna-evm.model.Chr13.114 Chr13 3440245 3457845 uncharacterized protein nan K11552
gene-evm.TU.Chr13.1140 rna-evm.model.Chr13.1140 Chr13 34230459 34236000 PREDICTED: Lactadherin GO:0005509 K17253

For more detailed data, you can explore the Download section to access the full dataset.