CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1121 rna-evm.model.Chr13.1121 Chr13 33690803 33693010 uncharacterized protein nan K24124
gene-evm.TU.Chr13.1122 rna-evm.model.Chr13.1122.2 Chr13 33702442 33785621 PREDICTED: Guanine nucleotide exchange factor DBS GO:0005085;GO:0005515;GO:0035023 K20685
gene-evm.TU.Chr13.1123 rna-evm.model.Chr13.1123 Chr13 33770193 33774922 PREDICTED: junctophilin nan K20394
gene-evm.TU.Chr13.1124 rna-evm.model.Chr13.1124 Chr13 33794212 33823668 PREDICTED: Probable glutamate--tRNA ligase, mitochondrial GO:0000166;GO:0004812;GO:0005524;GO:0043039 K01885
gene-evm.TU.Chr13.1125 rna-evm.model.Chr13.1125 Chr13 33827018 33835854 PREDICTED: Mitochondrial import inner membrane translocase subunit TIM14 nan K09535
gene-evm.TU.Chr13.1126 rna-evm.model.Chr13.1126 Chr13 33841448 33841885 uncharacterized protein nan nan
gene-evm.TU.Chr13.1128 rna-evm.model.Chr13.1128 Chr13 33861211 33862860 PREDICTED: Zinc finger protein 423 GO:0003676 K22402
gene-evm.TU.Chr13.1129 rna-evm.model.Chr13.1129 Chr13 33870486 33883939 PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase GO:0003975;GO:0006487;GO:0006488;GO:0008963;GO:0016020 K01001
gene-evm.TU.Chr13.113 rna-evm.model.Chr13.113 Chr13 3435126 3437614 PREDICTED: putative single-minded-like 2 nan K11276
gene-evm.TU.Chr13.1130 rna-evm.model.Chr13.1130 Chr13 33884095 33885446 PREDICTED: Histone H2A GO:0000786;GO:0003677;GO:0005634 K11251

For more detailed data, you can explore the Download section to access the full dataset.