CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1111 rna-evm.model.Chr13.1111 Chr13 33408489 33412513 PREDICTED: Leucine-rich repeat-containing G-protein coupled receptor 4 GO:0005515 K08399
gene-evm.TU.Chr13.1112 rna-evm.model.Chr13.1112 Chr13 33419476 33425320 PREDICTED: Leucine-rich repeat-containing G-protein coupled receptor 5 GO:0005515 K08399
gene-evm.TU.Chr13.1113 rna-evm.model.Chr13.1113 Chr13 33461482 33462329 PREDICTED: Mariner Mos1 transposase nan K07494
gene-evm.TU.Chr13.1114 rna-evm.model.Chr13.1114 Chr13 33481139 33482050 PREDICTED: Protein flightless-1 GO:0005515 K17256
gene-evm.TU.Chr13.1115 rna-evm.model.Chr13.1115 Chr13 33495802 33497559 PREDICTED: Toll-like receptor 6 GO:0005515 K08399
gene-evm.TU.Chr13.1116 rna-evm.model.Chr13.1116 Chr13 33507306 33507932 PREDICTED: Leucine-rich repeat-containing G-protein coupled receptor 6 GO:0005515 K08399
gene-evm.TU.Chr13.1118 rna-evm.model.Chr13.1118 Chr13 33539217 33540191 PREDICTED: Toll-like receptor 7 GO:0005515 K17256
gene-evm.TU.Chr13.1119 rna-evm.model.Chr13.1119 Chr13 33631572 33646732 PREDICTED: D(2) dopamine receptor A GO:0004930;GO:0007186;GO:0016020 K04157
gene-evm.TU.Chr13.112 rna-evm.model.Chr13.112 Chr13 3425373 3425918 uncharacterized protein nan nan
gene-evm.TU.Chr13.1120 rna-evm.model.Chr13.1120 Chr13 33675135 33683782 PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1 nan K11714

For more detailed data, you can explore the Download section to access the full dataset.