CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1101 rna-evm.model.Chr13.1101 Chr13 33159938 33198395 PREDICTED: Fibropellin-3 GO:0005509 K16681
gene-evm.TU.Chr13.1102 rna-evm.model.Chr13.1102 Chr13 33204398 33221697 PREDICTED: Snaclec salmorin subunit B nan K20298
gene-evm.TU.Chr13.1103 rna-evm.model.Chr13.1103.1 Chr13 33225834 33237153 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.1104 rna-evm.model.Chr13.1104 Chr13 33268112 33273590 PREDICTED: Monocarboxylate transporter 12 nan K08177
gene-evm.TU.Chr13.1105 rna-evm.model.Chr13.1105 Chr13 33278363 33286342 PREDICTED: beta-glucosidase [EC:3.2.1.21] GO:0016020;GO:0055085 K08177
gene-evm.TU.Chr13.1106 rna-evm.model.Chr13.1106 Chr13 33288007 33291058 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.1107 rna-evm.model.Chr13.1107 Chr13 33321095 33328053 PREDICTED: Oxalate:formate antiporter GO:0016020;GO:0055085 K08177
gene-evm.TU.Chr13.1109 rna-evm.model.Chr13.1109 Chr13 33329402 33351009 PREDICTED: Interferon regulatory factor 1 GO:0003676;GO:0000976 K10153
gene-evm.TU.Chr13.111 rna-evm.model.Chr13.111 Chr13 3366693 3392264 uncharacterized protein nan K10645
gene-evm.TU.Chr13.1110 rna-evm.model.Chr13.1110 Chr13 33355182 33379119 PREDICTED: Proline-, glutamic acid- and leucine-rich protein 1 nan K16913

For more detailed data, you can explore the Download section to access the full dataset.