CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1088 rna-evm.model.Chr13.1088 Chr13 32494931 32498437 PREDICTED: Stimulated by retinoic acid gene 6 protein-like nan K23088
gene-evm.TU.Chr13.1089 rna-evm.model.Chr13.1089 Chr13 32502470 32506097 PREDICTED: Receptor for retinol uptake STRA6 nan K23088
gene-evm.TU.Chr13.109 rna-evm.model.Chr13.109 Chr13 3311660 3318723 uncharacterized protein nan K26098
gene-evm.TU.Chr13.1090 rna-evm.model.Chr13.1090 Chr13 32509532 32518258 PREDICTED: Major facilitator superfamily domain-containing protein 1 GO:0016020;GO:0055085 K19801
gene-evm.TU.Chr13.1092 rna-evm.model.Chr13.1092 Chr13 32582253 32583353 PREDICTED: C-C chemokine receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr13.1094 rna-evm.model.Chr13.1094 Chr13 32675024 32694389 PREDICTED: D(1B) dopamine receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr13.1095 rna-evm.model.Chr13.1095 Chr13 32769074 32769787 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 GO:0003677;GO:0006310;GO:0015074 K27274
gene-evm.TU.Chr13.1097 rna-evm.model.Chr13.1097 Chr13 32844196 32845636 PREDICTED: solute carrier family 15, member 5 nan K07497
gene-evm.TU.Chr13.1099 rna-evm.model.Chr13.1099 Chr13 32942848 32943993 PREDICTED: C-C chemokine receptor type 1 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr13.110 rna-evm.model.Chr13.110 Chr13 3328467 3343048 uncharacterized protein nan K07114

For more detailed data, you can explore the Download section to access the full dataset.