CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1072 rna-evm.model.Chr13.1072 Chr13 31967501 31988375 PREDICTED: Sodium/potassium-transporting ATPase subunit beta-1 GO:0005890;GO:0006813;GO:0006814 K01540
gene-evm.TU.Chr13.1074 rna-evm.model.Chr13.1074 Chr13 32019756 32033998 PREDICTED: Sodium/potassium-transporting ATPase subunit beta-1 GO:0005890;GO:0006813;GO:0006814 K01540
gene-evm.TU.Chr13.1077 rna-evm.model.Chr13.1077 Chr13 32099696 32132812 uncharacterized protein nan K06790
gene-evm.TU.Chr13.1078 rna-evm.model.Chr13.1078 Chr13 32174034 32180558 PREDICTED: Zinc finger protein 862 nan K24642
gene-evm.TU.Chr13.1081 rna-evm.model.Chr13.1081 Chr13 32226685 32234848 PREDICTED: Zinc finger protein 112 GO:0003676 K09191
gene-evm.TU.Chr13.1082 rna-evm.model.Chr13.1082 Chr13 32240871 32246213 PREDICTED: Zinc finger and BTB domain-containing protein 41 GO:0003676 K22402
gene-evm.TU.Chr13.1083 rna-evm.model.Chr13.1083 Chr13 32247264 32254805 PREDICTED: Zinc finger protein 33A GO:0003676 K22534
gene-evm.TU.Chr13.1084 rna-evm.model.Chr13.1084 Chr13 32285375 32301890 uncharacterized protein nan K10160
gene-evm.TU.Chr13.1086 rna-evm.model.Chr13.1086 Chr13 32443477 32451598 PREDICTED: Zinc finger protein 484 GO:0003676;GO:0003677 K22534
gene-evm.TU.Chr13.1087 rna-evm.model.Chr13.1087 Chr13 32468252 32488237 PREDICTED: Receptor for retinol uptake STRA6 nan K23088

For more detailed data, you can explore the Download section to access the full dataset.