CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1060 rna-evm.model.Chr13.1060 Chr13 31363612 31364628 PREDICTED: NFX1-type zinc finger-containing protein 1 nan K11701
gene-evm.TU.Chr13.1061 rna-evm.model.Chr13.1061 Chr13 31364635 31365462 PREDICTED: NFX1-type zinc finger-containing protein 1 nan K11701
gene-evm.TU.Chr13.1063 rna-evm.model.Chr13.1063 Chr13 31419553 31434550 PREDICTED: Major facilitator superfamily domain-containing protein 8 GO:0016020;GO:0055085 K12307
gene-evm.TU.Chr13.1065 rna-evm.model.Chr13.1065 Chr13 31797238 31802594 uncharacterized protein nan nan
gene-evm.TU.Chr13.1066 rna-evm.model.Chr13.1066 Chr13 31921342 31921965 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr13.1067 rna-evm.model.Chr13.1067 Chr13 31922081 31922849 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr13.1068 rna-evm.model.Chr13.1068 Chr13 31923044 31923577 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr13.1069 rna-evm.model.Chr13.1069 Chr13 31924859 31928397 PREDICTED: ATP-dependent DNA helicase pfh1 GO:0000723;GO:0003678;GO:0006281 K15255
gene-evm.TU.Chr13.1070 rna-evm.model.Chr13.1070 Chr13 31928631 31929629 PREDICTED: Transcription initiation factor TFIID subunit 3 nan K14650
gene-evm.TU.Chr13.1071 rna-evm.model.Chr13.1071 Chr13 31953091 31964074 PREDICTED: Sodium/potassium-transporting ATPase subunit beta-1 GO:0005890;GO:0006813;GO:0006814 K01540

For more detailed data, you can explore the Download section to access the full dataset.