CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1760 rna-evm.model.Chr1.1760 Chr1 56040973 56051977 PREDICTED: Gamma-aminobutyric acid receptor subunit alpha-6 GO:0004888;GO:0004890;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0016020;GO:0034220 K05175
gene-evm.TU.Chr1.1762 rna-evm.model.Chr1.1762 Chr1 56204932 56226053 PREDICTED: Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 GO:0005096 K18439
gene-evm.TU.Chr1.1763 rna-evm.model.Chr1.1763 Chr1 56228057 56256882 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr1.1765 rna-evm.model.Chr1.1765 Chr1 56277615 56291254 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr1.1766 rna-evm.model.Chr1.1766 Chr1 56294845 56323674 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr1.1767 rna-evm.model.Chr1.1767 Chr1 56313648 56342903 PREDICTED: Neuronal acetylcholine receptor subunit alpha-9-I GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr1.1768 rna-evm.model.Chr1.1768 Chr1 56377713 56400962 PREDICTED: von Willebrand factor A domain-containing protein 3B nan K20915
gene-evm.TU.Chr1.1769 rna-evm.model.Chr1.1769 Chr1 56410495 56442923 PREDICTED: von Willebrand factor A domain-containing protein 3B nan K24509
gene-evm.TU.Chr1.177 rna-evm.model.Chr1.177 Chr1 5634856 5637875 PREDICTED: NAD(P)H dehydrogenase [quinone] 1 nan K00355
gene-evm.TU.Chr1.1770 rna-evm.model.Chr1.1770 Chr1 56443166 56469609 PREDICTED: Palmitoyltransferase ZDHHC15B nan K20028

For more detailed data, you can explore the Download section to access the full dataset.