CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.1040 rna-evm.model.Chr13.1040 Chr13 30740498 30740875 PREDICTED: GL21000 nan K11203
gene-evm.TU.Chr13.1041 rna-evm.model.Chr13.1041 Chr13 30746740 30750729 PREDICTED: Golgi-associated plant pathogenesis-related protein 1 nan K24835
gene-evm.TU.Chr13.1042 rna-evm.model.Chr13.1042 Chr13 30759567 30796911 PREDICTED: Fragile X mental retardation syndrome-related protein 1 homolog B GO:0003723;GO:0003729;GO:0006417 K15516
gene-evm.TU.Chr13.1043 rna-evm.model.Chr13.1043 Chr13 30801461 30828825 PREDICTED: WD repeat-containing protein 44 GO:0005515 K20241
gene-evm.TU.Chr13.1044 rna-evm.model.Chr13.1044 Chr13 30834719 30838170 PREDICTED: Foot protein 1 variant 1 nan K15353
gene-evm.TU.Chr13.1045 rna-evm.model.Chr13.1045 Chr13 30838123 30855096 PREDICTED: Tetraspanin-7 GO:0016020 K06571
gene-evm.TU.Chr13.1046 rna-evm.model.Chr13.1046 Chr13 30968233 31000824 PREDICTED: Fragile X mental retardation syndrome-related protein 2 GO:0003729;GO:0006417 K15516
gene-evm.TU.Chr13.1047 rna-evm.model.Chr13.1047 Chr13 31074876 31083515 PREDICTED: Acetylcholine receptor subunit delta GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04816
gene-evm.TU.Chr13.1048 rna-evm.model.Chr13.1048 Chr13 31113817 31116007 uncharacterized protein nan K18547
gene-evm.TU.Chr13.105 rna-evm.model.Chr13.105 Chr13 3075355 3076197 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.