CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.103 rna-evm.model.Chr13.103 Chr13 2890259 2890846 uncharacterized protein nan nan
gene-evm.TU.Chr13.1031_evm.TU.Chr13.1030 rna-evm.model.Chr13.1031_evm.model.Chr13.1030 Chr13 30399669 30498612 PREDICTED: Spermatogenesis-associated protein 13 GO:0005085;GO:0005515;GO:0035023 K05769
gene-evm.TU.Chr13.1032 rna-evm.model.Chr13.1032 Chr13 30500260 30512110 PREDICTED: mucin-2 GO:0005515 K06829
gene-evm.TU.Chr13.1033 rna-evm.model.Chr13.1033 Chr13 30517270 30525635 PREDICTED: Stimulator of interferon genes protein GO:0002218;GO:0005515;GO:0007165;GO:0032481 K12654
gene-evm.TU.Chr13.1034 rna-evm.model.Chr13.1034 Chr13 30533833 30561058 PREDICTED: Stimulator of interferon genes protein GO:0002218;GO:0005515;GO:0007165;GO:0032481 K12654
gene-evm.TU.Chr13.1036 rna-evm.model.Chr13.1036 Chr13 30610626 30612132 uncharacterized protein nan K12654
gene-evm.TU.Chr13.1037 rna-evm.model.Chr13.1037 Chr13 30635057 30678043 PREDICTED: Sacsin nan K17592
gene-evm.TU.Chr13.1038 rna-evm.model.Chr13.1038 Chr13 30691483 30700886 PREDICTED: Stimulator of interferon genes protein GO:0002218;GO:0005515;GO:0007165;GO:0032481 K12654
gene-evm.TU.Chr13.1039 rna-evm.model.Chr13.1039 Chr13 30725452 30741913 PREDICTED: Stimulator of interferon genes protein GO:0002218;GO:0005515;GO:0007165;GO:0032481 K12654
gene-evm.TU.Chr13.104 rna-evm.model.Chr13.104 Chr13 2892573 2910442 PREDICTED: B-cell receptor CD22 nan K17341

For more detailed data, you can explore the Download section to access the full dataset.