CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.977 rna-evm.model.Chr12.977 Chr12 32023861 32025561 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr12.978 rna-evm.model.Chr12.978 Chr12 32038120 32051163 PREDICTED: tripartite motif-containing protein 45 nan K24237
gene-evm.TU.Chr12.979 rna-evm.model.Chr12.979 Chr12 32058999 32074557 PREDICTED: Spindlin-3 GO:0007276 K06872
gene-evm.TU.Chr12.98 rna-evm.model.Chr12.98 Chr12 3548318 3612461 PREDICTED: Multidrug resistance protein 1 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05660
gene-evm.TU.Chr12.980 rna-evm.model.Chr12.980 Chr12 32103770 32119329 PREDICTED: Ectin (Fragment) nan K16857
gene-evm.TU.Chr12.981 rna-evm.model.Chr12.981.2 Chr12 32162966 32176935 uncharacterized protein nan K23106
gene-evm.TU.Chr12.982 rna-evm.model.Chr12.982 Chr12 32201879 32211184 PREDICTED: inner nuclear membrane protein Man1 GO:0008270 K21233
gene-evm.TU.Chr12.983 rna-evm.model.Chr12.983 Chr12 32275239 32276958 uncharacterized protein nan nan
gene-evm.TU.Chr12.984 rna-evm.model.Chr12.984 Chr12 32318042 32318905 uncharacterized protein nan nan
gene-evm.TU.Chr12.985 rna-evm.model.Chr12.985 Chr12 32465330 32465635 PREDICTED: vomeronasal 2 receptor nan K07499

For more detailed data, you can explore the Download section to access the full dataset.