CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.991 rna-evm.model.Chr12.991 Chr12 32762615 32766738 PREDICTED: Cornifelin homolog A nan nan
gene-evm.TU.Chr12.992 rna-evm.model.Chr12.992 Chr12 32769272 32783124 PREDICTED: Caspase-9 GO:0004197;GO:0006508;GO:0008234 K04397
gene-evm.TU.Chr12.993 rna-evm.model.Chr12.993 Chr12 32798018 32921902 PREDICTED: Tyrosine-protein phosphatase non-receptor type 4 GO:0004725;GO:0005515;GO:0005856;GO:0006470;GO:0016311;GO:0016791 K18037
gene-evm.TU.Chr12.994 rna-evm.model.Chr12.994 Chr12 32943031 32972043 PREDICTED: Deleted in lung and esophageal cancer protein 1 GO:0008285 K25548
gene-evm.TU.Chr12.995 rna-evm.model.Chr12.995 Chr12 32976407 32978702 PREDICTED: F-box/LRR-repeat protein 2 GO:0005515 K10268
gene-evm.TU.Chr12.996 rna-evm.model.Chr12.996 Chr12 32986678 33004148 PREDICTED: NACHT and WD repeat domain-containing protein 2 GO:0005515 K24734
gene-evm.TU.Chr12.997 rna-evm.model.Chr12.997 Chr12 33009709 33010778 PREDICTED: Slit homolog 1 protein nan K07523
gene-evm.TU.Chr12.999 rna-evm.model.Chr12.999 Chr12 33022885 33049998 PREDICTED: WD repeat-containing protein 75 GO:0005515 K14552
gene-evm.TU.Chr13.1 rna-evm.model.Chr13.1 Chr13 5728 72957 PREDICTED: Serine/threonine-protein kinase PAK 2 GO:0004672;GO:0004674;GO:0005524;GO:0006468;GO:0042981 K04409
gene-evm.TU.Chr13.1003 rna-evm.model.Chr13.1003 Chr13 29299163 29303147 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.