CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.956 rna-evm.model.Chr12.956 Chr12 31467308 31479029 PREDICTED: Polypeptide N-acetylgalactosaminyltransferase 5 nan K00710
gene-evm.TU.Chr12.957 rna-evm.model.Chr12.957 Chr12 31500892 31528457 PREDICTED: ATP-citrate synthase GO:0003824;GO:0046912;GO:0048037 K01648
gene-evm.TU.Chr12.958 rna-evm.model.Chr12.958.4 Chr12 31537963 31611447 PREDICTED: Partitioning defective 3 homolog GO:0005515 K04237
gene-evm.TU.Chr12.959 rna-evm.model.Chr12.959 Chr12 31617294 31643378 PREDICTED: Ceramide synthase 2 GO:0003677;GO:0016020 K23727
gene-evm.TU.Chr12.96 rna-evm.model.Chr12.96 Chr12 3530947 3531750 PREDICTED: organic solute transporter subunit alpha GO:0003676;GO:0008270 K09250
gene-evm.TU.Chr12.960 rna-evm.model.Chr12.960 Chr12 31656053 31667189 PREDICTED: Grancalcin GO:0005509 K23923
gene-evm.TU.Chr12.961 rna-evm.model.Chr12.961 Chr12 31682020 31696449 PREDICTED: Secretin receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K04585
gene-evm.TU.Chr12.962 rna-evm.model.Chr12.962 Chr12 31697796 31735570 PREDICTED: Parathyroid hormone/parathyroid hormone-related peptide receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04585
gene-evm.TU.Chr12.967 rna-evm.model.Chr12.967 Chr12 31976667 31977089 PREDICTED: tripartite motif-containing protein 2/3 nan K26041
gene-evm.TU.Chr12.975 rna-evm.model.Chr12.975 Chr12 31987550 31988065 PREDICTED: Master replication protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.